If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ), 'gf_id' => 'HOM05D000623', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000623' ), 'data_identifier' => 'HOM05D000623', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000623', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03830' => 'bna', 'A02p14220' => 'bna', 'A03p08070' => 'bna', 'A03p19410' => 'bna', 'A05p10640' => 'bna', 'A05p43680' => 'bna', 'A06p21420' => 'bna', 'A07p29270' => 'bna', 'A07p32570' => 'bna', 'A08p08310' => 'bna', 'A09p32170' => 'bna', 'A10p22340' => 'bna', 'Aa31LG11G12690' => 'aar', 'Aa31LG4G14660' => 'aar', 'Aa31LG4G4900' => 'aar', 'Aa31LG5G14160' => 'aar', 'Aa31LG6G8380' => 'aar', 'Aa31LG9G16130' => 'aar', 'Aa31LG9G8210' => 'aar', 'Aa31LG9G8230' => 'aar', 'Aa31sc377G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2173' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3640' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.450' => 'aag', 'Actinidia04886' => 'ach', 'Actinidia08076' => 'ach', 'Actinidia23311' => 'ach', 'Actinidia30656' => 'ach', 'Actinidia33679' => 'ach', 'Actinidia34310' => 'ach', 'Actinidia34311' => 'ach', 'Actinidia37628' => 'ach', 'Actinidia37833' => 'ach', 'Ah.02g130950' => 'amhyb', 'Ah.04g164940' => 'amhyb', 'Ah.05g172810' => 'amhyb', 'Ah.09g232280' => 'amhyb', 'Ah.11g048370' => 'amhyb', 'Ah.13g072730' => 'amhyb', 'AL1G48850' => 'aly', 'AL2G25980' => 'aly', 'AL2G34570' => 'aly', 'AL3G13430' => 'aly', 'AL3G13440' => 'aly', 'AL4G31110' => 'aly', 'AL5G23960' => 'aly', 'AL6G27900' => 'aly', 'AL8G14590' => 'aly', 'Aqoxy1G00091' => 'aox', 'Aqoxy1G01423' => 'aox', 'Aqoxy3G01520' => 'aox', 'Aqoxy3G03381' => 'aox', 'Aqoxy5G02492' => 'aox', 'Aqoxy6G02733' => 'aox', 'Aqoxy7G00639' => 'aox', 'Aqoxy7G02815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03WG9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.05AE8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.13ZWE0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FBG5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3LU7BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P2HKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SNF5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4051GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45WQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W88IT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BIG5T2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZS8FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGZ3AH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVZ30F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVW7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGNJ4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRE424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7NSYA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6C35C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS8UUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCHX4J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF7QK5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YLGK2W' => 'arhy', 'AT1G34270' => 'ath', 'AT1G67410' => 'ath', 'AT1G74680' => 'ath', 'AT2G35100' => 'ath', 'AT3G03650' => 'ath', 'AT3G45400' => 'ath', 'AT5G16890' => 'ath', 'AT5G44930' => 'ath', 'ATR0068G016' => 'atr', 'ATR0561G154' => 'atr', 'ATR0564G080' => 'atr', 'ATR0752G221' => 'atr', 'ATR0767G132' => 'atr', 'ATR1096G091' => 'atr', 'Atru.BG.252.p' => 'acertr', 'Atru.chr10.565' => 'acertr', 'Atru.chr10.567' => 'acertr', 'Atru.chr11.2310' => 'acertr', 'Atru.chr13.1870' => 'acertr', 'Atru.chr2.1565' => 'acertr', 'Atru.chr9.224' => 'acertr', 'AUR62002067' => 'cqu', 'AUR62004677' => 'cqu', 'AUR62005607' => 'cqu', 'AUR62008418' => 'cqu', 'AUR62015606' => 'cqu', 'AUR62021677' => 'cqu', 'AUR62022508' => 'cqu', 'AUR62022509' => 'cqu', 'AUR62023595' => 'cqu', 'AUR62024122' => 'cqu', 'AUR62028180' => 'cqu', 'AUR62029318' => 'cqu', 'AUR62035374' => 'cqu', 'AUR62038596' => 'cqu', 'BcaB01g01088' => 'bca', 'BcaB01g04966' => 'bca', 'BcaB02g06962' => 'bca', 'BcaB02g09479' => 'bca', 'BcaB02g09481' => 'bca', 'BcaB03g15354' => 'bca', 'BcaB03g15355' => 'bca', 'BcaB04g17890' => 'bca', 'BcaB05g24283' => 'bca', 'BcaB06g28805' => 'bca', 'BcaB07g33142' => 'bca', 'BcaC01g01972' => 'bca', 'BcaC01g05742' => 'bca', 'BcaC03g14840' => 'bca', 'BcaC03g16715' => 'bca', 'BcaC03g18521' => 'bca', 'BcaC05g29868' => 'bca', 'BcaC05g29869' => 'bca', 'BcaC05g30261' => 'bca', 'BcaC08g43791' => 'bca', 'BcaC09g47724' => 'bca', 'BcaNung04949' => 'bca', 'BcaNung06474' => 'bca', 'BolC1t05819H' => 'bol', 'BolC2t06780H' => 'bol', 'BolC2t08445H' => 'bol', 'BolC3t13428H' => 'bol', 'BolC3t14664H' => 'bol', 'BolC3t19253H' => 'bol', 'BolC4t22964H' => 'bol', 'BolC5t34989H' => 'bol', 'BolC6t36301H' => 'bol', 'BolC6t38433H' => 'bol', 'BolC6t38961H' => 'bol', 'BolC7t40980H' => 'bol', 'BolC8t47869H' => 'bol', 'BolC9t58852H' => 'bol', 'BraA02t05349Z' => 'bra', 'BraA02t06484Z' => 'bra', 'BraA03t10132Z' => 'bra', 'BraA03t11197Z' => 'bra', 'BraA05t20005Z' => 'bra', 'BraA05t23107Z' => 'bra', 'BraA06t25229Z' => 'bra', 'BraA07t30566Z' => 'bra', 'BraA07t30881Z' => 'bra', 'BraA08t32848Z' => 'bra', 'BraA09t38763Z' => 'bra', 'BraA10t44293Z' => 'bra', 'C02p23010' => 'bna', 'C02p45590' => 'bna', 'C03p09330' => 'bna', 'C03p22650' => 'bna', 'C03p69930' => 'bna', 'C04p13740' => 'bna', 'C05p63260' => 'bna', 'C06p11760' => 'bna', 'C06p33180' => 'bna', 'C06p38710' => 'bna', 'C07p05780' => 'bna', 'C09p60190' => 'bna', 'CAN.G1131.16' => 'can', 'CAN.G128.140' => 'can', 'CAN.G149.14' => 'can', 'CAN.G170.107' => 'can', 'CAN.G37.4' => 'can', 'CAN.G571.7' => 'can', 'CAN.G680.13' => 'can', 'CAN.G837.18' => 'can', 'CANSAT01G0094' => 'cansat', 'CANSAT21G1001' => 'cansat', 'CANSAT25G0882' => 'cansat', 'CANSAT35G0729' => 'cansat', 'CANSAT78G1610' => 'cansat', 'CANSAT80G0374' => 'cansat', 'CARHR033760' => 'chi', 'CARHR059930' => 'chi', 'CARHR059940' => 'chi', 'CARHR067970' => 'chi', 'CARHR077700' => 'chi', 'CARHR129240' => 'chi', 'CARHR129250' => 'chi', 'CARHR150430' => 'chi', 'CARHR196270' => 'chi', 'Carub.0001s3244' => 'cru', 'Carub.0002s1374' => 'cru', 'Carub.0002s2146' => 'cru', 'Carub.0003s0281' => 'cru', 'Carub.0004s1678' => 'cru', 'Carub.0005s1122' => 'cru', 'Carub.0006s1511' => 'cru', 'Carub.0008s0337' => 'cru', 'Ca_03443_v3' => 'car', 'Ca_04458_v3' => 'car', 'Ca_04914_v3' => 'car', 'Ca_10632_v3' => 'car', 'Ca_13781_v3' => 'car', 'Ca_16470_v3' => 'car', 'Ca_18037_v3' => 'car', 'Ca_18752_v3' => 'car', 'CBR_g24139' => 'cbr', 'CBR_g3590' => 'cbr', 'CBR_g36443' => 'cbr', 'CBR_g4505' => 'cbr', 'Cc00_g13510' => 'ccan', 'Cc00_g23080' => 'ccan', 'Cc00_g28230' => 'ccan', 'Cc02_g00260' => 'ccan', 'Cc02_g28590' => 'ccan', 'Cc06_g21460' => 'ccan', 'Cc09_g05980' => 'ccan', 'CDE02G0479' => 'cde', 'CDE02G1521' => 'cde', 'CDE02G2816' => 'cde', 'CDE04G1785' => 'cde', 'CDE05G2105' => 'cde', 'CDE07G1495' => 'cde', 'CDE08G0226' => 'cde', 'CDE08G0653' => 'cde', 'CDE09G1431' => 'cde', 'Cfa000702' => 'cfa', 'Cfa009327' => 'cfa', 'Cfa016037' => 'cfa', 'Cfa018225' => 'cfa', 'Cfa018942' => 'cfa', 'Cfa019870' => 'cfa', 'Ciclev10000997m.g' => 'ccl', 'Ciclev10015089m.g' => 'ccl', 'Ciclev10019794m.g' => 'ccl', 'Ciclev10019875m.g' => 'ccl', 'Ciclev10031340m.g' => 'ccl', 'Ciclev10031600m.g' => 'ccl', 'CiPaw.05G111300' => 'cil', 'CiPaw.05G219300' => 'cil', 'CiPaw.06G033100' => 'cil', 'CiPaw.06G101700' => 'cil', 'CiPaw.09G165600' => 'cil', 'CiPaw.10G064000' => 'cil', 'CiPaw.11G044500' => 'cil', 'CiPaw.16G005500' => 'cil', 'ClCG01G009590' => 'cla', 'ClCG02G014450' => 'cla', 'ClCG04G012250' => 'cla', 'ClCG08G010090' => 'cla', 'ClCG09G010660' => 'cla', 'COL.COLO4_06726' => 'col', 'COL.COLO4_09293' => 'col', 'COL.COLO4_17649' => 'col', 'COL.COLO4_20385' => 'col', 'COL.COLO4_36789' => 'col', 'COL.COLO4_37804' => 'col', 'Cpa.g.sc111.8' => 'cpa', 'Cpa.g.sc30.157' => 'cpa', 'Cpa.g.sc43.42' => 'cpa', 'Cpa.g.sc43.87' => 'cpa', 'Cpa.g.sc66.112' => 'cpa', 'Cpa.g.sc73.11' => 'cpa', 'CsaV3_1G005500' => 'csa', 'CsaV3_1G046190' => 'csa', 'CsaV3_2G007550' => 'csa', 'CsaV3_6G032250' => 'csa', 'CsaV3_7G021650' => 'csa', 'CSS0001515' => 'camsi', 'CSS0006763' => 'camsi', 'CSS0008838' => 'camsi', 'CSS0009892' => 'camsi', 'CSS0014913' => 'camsi', 'CSS0015652' => 'camsi', 'CSS0022570' => 'camsi', 'CSS0023791' => 'camsi', 'CSS0034064' => 'camsi', 'CSS0035670' => 'camsi', 'CSS0036602' => 'camsi', 'CSS0044377' => 'camsi', 'CSS0046367' => 'camsi', 'DCAR_004332' => 'dca', 'DCAR_009018' => 'dca', 'DCAR_013496' => 'dca', 'DCAR_014272' => 'dca', 'DCAR_016555' => 'dca', 'DCAR_020410' => 'dca', 'DCAR_020641' => 'dca', 'DCAR_026890' => 'dca', 'DCAR_031198' => 'dca', 'Dinv09568' => 'din', 'Dinv14564' => 'din', 'Dinv14831' => 'din', 'Dinv19961' => 'din', 'Dinv25925' => 'din', 'Dinv27401' => 'din', 'Dinv29156' => 'din', 'Dinv37030' => 'din', 'Duzib052G0628' => 'dzi', 'Duzib084G0119' => 'dzi', 'Duzib128G0029' => 'dzi', 'Duzib128G2060' => 'dzi', 'Duzib132G0786' => 'dzi', 'Duzib177G0453' => 'dzi', 'Duzib177G0563' => 'dzi', 'Duzib177G1063' => 'dzi', 'Duzib251G0180' => 'dzi', 'Duzib268G0113' => 'dzi', 'ECA232G0768' => 'eca', 'ECA232G4475' => 'eca', 'ECA233G4841' => 'eca', 'ECA234G0578' => 'eca', 'ECA234G2541' => 'eca', 'ECA234G3136' => 'eca', 'ECA247G3584' => 'eca', 'ECA248G2372' => 'eca', 'EL10Ac1g00054' => 'bvu', 'EL10Ac3g05072' => 'bvu', 'EL10Ac5g11017' => 'bvu', 'EL10Ac6g13487' => 'bvu', 'EL10Ac7g17108' => 'bvu', 'EL10Ac8g19482' => 'bvu', 'Eucgr.A02153' => 'egr', 'Eucgr.B00504' => 'egr', 'Eucgr.B03487' => 'egr', 'Eucgr.E04252' => 'egr', 'Eucgr.F01298' => 'egr', 'Eucgr.F02636' => 'egr', 'Eucgr.K00083' => 'egr', 'FAN03G1666' => 'fan', 'FAN04G2483' => 'fan', 'FAN07G2573' => 'fan', 'FAN08G0860' => 'fan', 'FAN09G0159' => 'fan', 'FAN12G3873' => 'fan', 'FAN12G4291' => 'fan', 'FAN13G1031' => 'fan', 'FAN16G0877' => 'fan', 'FAN17G1393' => 'fan', 'FAN17G3074' => 'fan', 'FAN18G1825' => 'fan', 'FAN20G3078' => 'fan', 'FAN21G3437' => 'fan', 'FAN22G0350' => 'fan', 'FAN24G1150' => 'fan', 'FAN24G1792' => 'fan', 'FAN25G1017' => 'fan', 'FAN27G3484' => 'fan', 'FvH4_2g12430' => 'fve', 'FvH4_3g12450' => 'fve', 'FvH4_4g14300' => 'fve', 'FvH4_4g23900' => 'fve', 'FvH4_5g14940' => 'fve', 'FvH4_7g34020' => 'fve', 'Glyma.01G057900' => 'gma', 'Glyma.03G006800' => 'gma', 'Glyma.04G169500' => 'gma', 'Glyma.05G026801' => 'gma', 'Glyma.05G146900' => 'gma', 'Glyma.05G152050' => 'gma', 'Glyma.06G193900' => 'gma', 'Glyma.07G220600' => 'gma', 'Glyma.08G103800' => 'gma', 'Glyma.10G218200' => 'gma', 'Glyma.11G107900' => 'gma', 'Glyma.12G017500' => 'gma', 'Glyma.13G030650' => 'gma', 'Glyma.17G100100' => 'gma', 'Glyma.19G119100' => 'gma', 'Glyma.20G019000' => 'gma', 'Glyma.20G173400' => 'gma', 'Gohir.A01G160600' => 'ghi', 'Gohir.A02G061400' => 'ghi', 'Gohir.A03G126900' => 'ghi', 'Gohir.A03G217300' => 'ghi', 'Gohir.A05G310800' => 'ghi', 'Gohir.A08G094700' => 'ghi', 'Gohir.A08G221672' => 'ghi', 'Gohir.A11G226300' => 'ghi', 'Gohir.A13G160600' => 'ghi', 'Gohir.D01G148200' => 'ghi', 'Gohir.D02G067000' => 'ghi', 'Gohir.D02G150300' => 'ghi', 'Gohir.D02G238900' => 'ghi', 'Gohir.D02G239200' => 'ghi', 'Gohir.D03G051000' => 'ghi', 'Gohir.D05G311600' => 'ghi', 'Gohir.D08G105700' => 'ghi', 'Gohir.D08G241900' => 'ghi', 'Gohir.D10G238404' => 'ghi', 'Gohir.D11G239300' => 'ghi', 'Gohir.D13G165800' => 'ghi', 'Gorai.002G184100' => 'gra', 'Gorai.003G052700' => 'gra', 'Gorai.004G113300' => 'gra', 'Gorai.004G257200' => 'gra', 'Gorai.005G075900' => 'gra', 'Gorai.005G168600' => 'gra', 'Gorai.005G267400' => 'gra', 'Gorai.007G252800' => 'gra', 'Gorai.009G332700' => 'gra', 'Gorai.011G272600' => 'gra', 'Gorai.011G272700' => 'gra', 'Gorai.013G196700' => 'gra', 'GSVIVG01008002001' => 'vvi', 'GSVIVG01010454001' => 'vvi', 'GSVIVG01012106001' => 'vvi', 'GSVIVG01014123001' => 'vvi', 'GSVIVG01029936001' => 'vvi', 'GSVIVG01036826001' => 'vvi', 'GSVIVG01036850001' => 'vvi', 'HanXRQChr02g0033091' => 'han', 'HanXRQChr02g0038921' => 'han', 'HanXRQChr03g0088471' => 'han', 'HanXRQChr08g0207761' => 'han', 'HanXRQChr09g0258371' => 'han', 'HanXRQChr09g0270861' => 'han', 'HanXRQChr11g0345881' => 'han', 'HanXRQChr11g0346761' => 'han', 'HanXRQChr12g0385411' => 'han', 'HanXRQChr14g0455031' => 'han', 'Haze_00420' => 'cav', 'Haze_06077' => 'cav', 'Haze_06078' => 'cav', 'Haze_07326' => 'cav', 'Haze_12400' => 'cav', 'Haze_12402' => 'cav', 'Haze_17877' => 'cav', 'Haze_20384' => 'cav', 'Hma1.2p1_0104F.1_g049930' => 'hma', 'Hma1.2p1_0138F.1_g062880' => 'hma', 'Hma1.2p1_0275F.1_g110830' => 'hma', 'Hma1.2p1_0374F.1_g138470' => 'hma', 'Hma1.2p1_0735F.1_g210690' => 'hma', 'Hma1.2p1_1005F.1_g246890' => 'hma', 'Hma1.2p1_1680F.1_g297150' => 'hma', 'HPP92_001415' => 'vpl', 'HPP92_001422' => 'vpl', 'HPP92_002269' => 'vpl', 'HPP92_002912' => 'vpl', 'HPP92_002913' => 'vpl', 'HPP92_013171' => 'vpl', 'HPP92_013172' => 'vpl', 'HPP92_013283' => 'vpl', 'HPP92_016266' => 'vpl', 'HPP92_016429' => 'vpl', 'HPP92_016430' => 'vpl', 'HPP92_026360' => 'vpl', 'Hund02650' => 'sun', 'Hund06086' => 'sun', 'Hund09348' => 'sun', 'Hund09794' => 'sun', 'Hund15193' => 'sun', 'Hund17682' => 'sun', 'Hund25460' => 'sun', 'Hund27068' => 'sun', 'Lalb_Chr02g0141711' => 'lal', 'Lalb_Chr02g0157511' => 'lal', 'Lalb_Chr02g0157521' => 'lal', 'Lalb_Chr07g0187461' => 'lal', 'Lalb_Chr08g0234461' => 'lal', 'Lalb_Chr09g0320171' => 'lal', 'Lalb_Chr09g0328661' => 'lal', 'Lalb_Chr14g0364981' => 'lal', 'Lalb_Chr15g0083961' => 'lal', 'Lalb_Chr16g0385151' => 'lal', 'Lalb_Chr21g0305681' => 'lal', 'Lalb_Chr22g0358451' => 'lal', 'Lalb_Chr23g0273821' => 'lal', 'Lj1C1146T5' => 'lonja', 'Lj1g0001747' => 'lja', 'Lj1g0009596' => 'lja', 'Lj2g0007498' => 'lja', 'Lj3A1067G57' => 'lonja', 'Lj3A887G70' => 'lonja', 'Lj3g0009745' => 'lja', 'Lj4g0006288' => 'lja', 'Lj4g0013771' => 'lja', 'Lj5A111T87' => 'lonja', 'Lj5g0022310' => 'lja', 'Lj6A825T66' => 'lonja', 'Lj7A305T42' => 'lonja', 'Lj9A464T84' => 'lonja', 'Lsat_1_v5_gn_1_12761' => 'lsa', 'Lsat_1_v5_gn_1_12900' => 'lsa', 'Lsat_1_v5_gn_1_61821' => 'lsa', 'Lsat_1_v5_gn_3_106840' => 'lsa', 'Lsat_1_v5_gn_4_108500' => 'lsa', 'Lsat_1_v5_gn_4_3260' => 'lsa', 'Lsat_1_v5_gn_5_19580' => 'lsa', 'Lsat_1_v5_gn_8_117301' => 'lsa', 'Lsat_1_v5_gn_8_118060' => 'lsa', 'Lsat_1_v5_gn_8_148901' => 'lsa', 'Lsat_1_v5_gn_9_47601' => 'lsa', 'Manes.02G188600' => 'mes', 'Manes.08G151400' => 'mes', 'Manes.09G126700' => 'mes', 'Manes.09G135800' => 'mes', 'Manes.09G163200' => 'mes', 'Manes.12G012500' => 'mes', 'Manes.14G078000' => 'mes', 'Manes.16G056800' => 'mes', 'Manes.18G098000' => 'mes', 'Mapoly0006s0032' => 'mpo', 'Mapoly0147s0031' => 'mpo', 'MBI02_g35826_MAGBIO' => 'mbi', 'MBI05_g45848_MAGBIO' => 'mbi', 'MBI13_g20635_MAGBIO' => 'mbi', 'MBI17_g15291_MAGBIO' => 'mbi', 'MBI19_g25012_MAGBIO' => 'mbi', 'MBI19_g27268_MAGBIO' => 'mbi', 'MBI19_g45543_MAGBIO' => 'mbi', 'MD01G1236700' => 'mdo', 'MD05G1038500' => 'mdo', 'MD05G1250200' => 'mdo', 'MD06G1193300' => 'mdo', 'MD07G1309300' => 'mdo', 'MD10G1044300' => 'mdo', 'MD10G1231200' => 'mdo', 'MD12G1013400' => 'mdo', 'MD13G1117800' => 'mdo', 'MD14G1010900' => 'mdo', 'MD14G1200400' => 'mdo', 'MD16G1118000' => 'mdo', 'Medtr1g097090' => 'mtr', 'Medtr3g037720' => 'mtr', 'Medtr3g085480' => 'mtr', 'Medtr4g077920' => 'mtr', 'Medtr4g084200' => 'mtr', 'Medtr6g027310' => 'mtr', 'Medtr7g087100' => 'mtr', 'Medtr8g080490' => 'mtr', 'MELO3C001983.2' => 'cme', 'MELO3C004131.2' => 'cme', 'MELO3C011456.2' => 'cme', 'MELO3C013184.2' => 'cme', 'MELO3C021733.2' => 'cme', 'Migut.C01205' => 'egut', 'Migut.D01818' => 'egut', 'Migut.D02123' => 'egut', 'Migut.F00093' => 'egut', 'Migut.I00177' => 'egut', 'Migut.J00477' => 'egut', 'Migut.J01537' => 'egut', 'Migut.K00215' => 'egut', 'Migut.K00717' => 'egut', 'Migut.L00010' => 'egut', 'MSTRG.13311' => 'ama', 'MSTRG.1493' => 'ama', 'MSTRG.19732' => 'ama', 'MSTRG.23030' => 'ama', 'MSTRG.26205' => 'ama', 'MSTRG.26928' => 'ama', 'Nitab4.5_0000021g0630' => 'nta', 'Nitab4.5_0000051g0040' => 'nta', 'Nitab4.5_0000121g0200' => 'nta', 'Nitab4.5_0000613g0110' => 'nta', 'Nitab4.5_0000889g0050' => 'nta', 'Nitab4.5_0001128g0140' => 'nta', 'Nitab4.5_0001141g0040' => 'nta', 'Nitab4.5_0001288g0130' => 'nta', 'Nitab4.5_0001394g0040' => 'nta', 'Nitab4.5_0001623g0010' => 'nta', 'Nitab4.5_0001762g0090' => 'nta', 'Nitab4.5_0004148g0050' => 'nta', 'Nitab4.5_0004159g0040' => 'nta', 'Nitab4.5_0006000g0010' => 'nta', 'Nitab4.5_0015821g0010' => 'nta', 'Nitab4.5_0025640g0010' => 'nta', 'Nn1g01355' => 'nnu', 'Nn2g14620' => 'nnu', 'Nn2g14630' => 'nnu', 'Nn3g17241' => 'nnu', 'Nn3g20288' => 'nnu', 'Nn4g23167' => 'nnu', 'Nn5g27887' => 'nnu', 'Nn6g34261' => 'nnu', 'Nn7g37138' => 'nnu', 'Oeu002103.1' => 'oeu', 'Oeu002104.1' => 'oeu', 'Oeu006533.2' => 'oeu', 'Oeu009083.2' => 'oeu', 'Oeu029790.1' => 'oeu', 'Oeu030016.1' => 'oeu', 'Oeu032950.3' => 'oeu', 'Oeu041668.3' => 'oeu', 'Oeu045552.1' => 'oeu', 'Oeu047298.3' => 'oeu', 'Oeu052790.1' => 'oeu', 'Oeu056035.1' => 'oeu', 'Oeu060807.1' => 'oeu', 'Oeu060808.1' => 'oeu', 'Oeu063726.1' => 'oeu', 'Os01g0811400' => 'osa', 'Os01g0921300' => 'osa', 'Os02g0477401' => 'osa', 'Os03g0324700' => 'osa', 'Os04g0670600' => 'osa', 'Os07g0567000' => 'osa', 'Os08g0438600' => 'osa', 'Os11g0128000' => 'osa', 'Os12g0124400' => 'osa', 'Peaxi162Scf00076g00115' => 'pax', 'Peaxi162Scf00149g00225' => 'pax', 'Peaxi162Scf00198g00612' => 'pax', 'Peaxi162Scf00274g00623' => 'pax', 'Peaxi162Scf00449g00824' => 'pax', 'Peaxi162Scf00476g00634' => 'pax', 'Peaxi162Scf00516g00649' => 'pax', 'Peaxi162Scf00518g00429' => 'pax', 'Peaxi162Scf00575g00313' => 'pax', 'Peaxi162Scf01256g00224' => 'pax', 'PGR042G0602' => 'pgr', 'PGR042G3662' => 'pgr', 'PGR083G0804' => 'pgr', 'PGR102G0974' => 'pgr', 'PGR142G0062' => 'pgr', 'PGR142G3421' => 'pgr', 'PGR142G3700' => 'pgr', 'PGSC0003DMG400010426' => 'stu', 'PGSC0003DMG400014088' => 'stu', 'PGSC0003DMG400019532' => 'stu', 'PGSC0003DMG400022917' => 'stu', 'PGSC0003DMG400028213' => 'stu', 'PGSC0003DMG400030213' => 'stu', 'PGSC0003DMG400033360' => 'stu', 'PGSC0003DMG402003156' => 'stu', 'Phvul.001G107400' => 'pvu', 'Phvul.002G097200' => 'pvu', 'Phvul.003G190200' => 'pvu', 'Phvul.004G074100' => 'pvu', 'Phvul.007G087100' => 'pvu', 'Phvul.009G187300' => 'pvu', 'Phvul.011G019900' => 'pvu', 'Phvul.L001646' => 'pvu', 'Phvul.L001680' => 'pvu', 'Potri.002G210000' => 'ptr', 'Potri.005G055000' => 'ptr', 'Potri.008G034500' => 'ptr', 'Potri.010G227901' => 'ptr', 'Potri.012G124600' => 'ptr', 'Potri.013G067400' => 'ptr', 'Potri.013G116200' => 'ptr', 'Potri.015G124800' => 'ptr', 'Potri.019G044600' => 'ptr', 'Potri.019G049800' => 'ptr', 'Potri.019G086800' => 'ptr', 'Pp3c10_16070' => 'ppa', 'Pp3c11_1480' => 'ppa', 'Pp3c14_17240' => 'ppa', 'Pp3c14_19620' => 'ppa', 'Pp3c16_11220' => 'ppa', 'Pp3c16_12540' => 'ppa', 'Pp3c1_5560' => 'ppa', 'Pp3c22_4950' => 'ppa', 'Pp3c25_2840' => 'ppa', 'Pp3c2_14440' => 'ppa', 'Pp3c2_8340' => 'ppa', 'Pp3c5_15410' => 'ppa', 'Pp3c6_15330' => 'ppa', 'Prupe.1G227200' => 'ppe', 'Prupe.2G326700' => 'ppe', 'Prupe.4G113400' => 'ppe', 'Prupe.5G193500' => 'ppe', 'Prupe.7G017800' => 'ppe', 'Prupe.8G050800' => 'ppe', 'Psat1g088600' => 'psa', 'Psat3g085440' => 'psa', 'Psat5g095280' => 'psa', 'Psat5g203440' => 'psa', 'Psat6g175040' => 'psa', 'Psat6g188400' => 'psa', 'Psat7g077680' => 'psa', 'Psat7g130080' => 'psa', 'Psat7g170560' => 'psa', 'PSO013G0386' => 'pso', 'PSO017G1488' => 'pso', 'PSO210G4952' => 'pso', 'PSO339G0021' => 'pso', 'PSO339G1549' => 'pso', 'PSO384G3175' => 'pso', 'PSO384G4240' => 'pso', 'PSO478G3070' => 'pso', 'PSO675G1202' => 'pso', 'PSO761G0057' => 'pso', 'PSO832G3138' => 'pso', 'QL02p034778' => 'qlo', 'QL03p053653' => 'qlo', 'QL07p016638' => 'qlo', 'QL09p023747' => 'qlo', 'QL10p000318' => 'qlo', 'QL10p017015' => 'qlo', 'QL11p016219' => 'qlo', 'QL11p016245' => 'qlo', 'QL93p1842_0021' => 'qlo', 'QL93p1842_0038' => 'qlo', 'RcHm_v2.0_Chr1g0384281' => 'rch', 'RcHm_v2.0_Chr3g0495831' => 'rch', 'RcHm_v2.0_Chr4g0430541' => 'rch', 'RcHm_v2.0_Chr5g0020371' => 'rch', 'RcHm_v2.0_Chr5g0020381' => 'rch', 'RcHm_v2.0_Chr6g0272581' => 'rch', 'RcHm_v2.0_Chr6g0272591' => 'rch', 'RcHm_v2.0_Chr7g0181431' => 'rch', 'Rhsim03G0046100' => 'rsi', 'Rhsim03G0221800' => 'rsi', 'Rhsim03G0260400' => 'rsi', 'Rhsim05G0022200' => 'rsi', 'Rhsim06G0110400' => 'rsi', 'Rhsim07G0247900' => 'rsi', 'Rhsim08G0154900' => 'rsi', 'Rhsim12G0027500' => 'rsi', 'Rhsim13G0128600' => 'rsi', 'Rhsim13G0128800' => 'rsi', 'Rhsim13G0128900' => 'rsi', 'Sabra02G0150500' => 'sbr', 'Sabra08G0022800' => 'sbr', 'Sabra13G0058800' => 'sbr', 'Sabra14G0099400' => 'sbr', 'Sabra15G0139300' => 'sbr', 'Sabra17G0072200' => 'sbr', 'Sabra19G0055000' => 'sbr', 'Sabra19G0059400' => 'sbr', 'Sabra19G0097300' => 'sbr', 'SalBow2G3206' => 'sbo', 'SalBow4G0865' => 'sbo', 'SalBow4G1923' => 'sbo', 'SalBow6G3431' => 'sbo', 'SalBow6G5771' => 'sbo', 'SalBow7G0292' => 'sbo', 'SalBow7G4524' => 'sbo', 'SalBow7G4530' => 'sbo', 'Sc01g0001630' => 'sci', 'Sc01g0006130' => 'sci', 'Sc04g0010070' => 'sci', 'Sc10g0009850' => 'sci', 'Sc10g0009880' => 'sci', 'Sc11g0000470' => 'sci', 'Sc19g0000160' => 'sci', 'Sc24g0002740' => 'sci', 'Sed0007302' => 'sed', 'Sed0008010' => 'sed', 'Sed0010011' => 'sed', 'Sed0018270' => 'sed', 'Sed0020468' => 'sed', 'Sed0023446' => 'sed', 'Sed0024078' => 'sed', 'SEGI_00459' => 'sgi', 'SEGI_02667' => 'sgi', 'SEGI_05346' => 'sgi', 'SEGI_11770' => 'sgi', 'SEGI_19686' => 'sgi', 'SEGI_27194' => 'sgi', 'SEGI_29993' => 'sgi', 'SEGI_31275' => 'sgi', 'SEGI_35165' => 'sgi', 'SGA_v2.0_scaffold118G32451' => 'sas', 'SGA_v2.0_scaffold12G06083' => 'sas', 'SGA_v2.0_scaffold17G07982' => 'sas', 'SGA_v2.0_scaffold18G08512' => 'sas', 'SGA_v2.0_scaffold24G10520' => 'sas', 'SGA_v2.0_scaffold341G49374' => 'sas', 'SGA_v2.0_scaffold44G16894' => 'sas', 'SGA_v2.0_scaffold51G18670' => 'sas', 'SGA_v2.0_scaffold56G20017' => 'sas', 'SGA_v2.0_scaffold69G23219' => 'sas', 'SGA_v2.0_scaffold87G27149' => 'sas', 'SGA_v2.0_scaffold9G04741' => 'sas', 'SHI09184' => 'shi', 'SHI14859' => 'shi', 'SHI17956' => 'shi', 'SMO115G0065' => 'smo', 'SMO145G0244' => 'smo', 'SMO147G0256' => 'smo', 'SMO164G0109' => 'smo', 'SMO169G0257' => 'smo', 'SMO347G0143' => 'smo', 'Solyc02g068690.3' => 'sly', 'Solyc03g044880.4' => 'sly', 'Solyc03g097060.4' => 'sly', 'Solyc03g116040.2' => 'sly', 'Solyc04g045650.3' => 'sly', 'Solyc07g021410.1' => 'sly', 'Solyc08g062600.3' => 'sly', 'Solyc10g081430.2' => 'sly', 'Solyc11g013840.3' => 'sly', 'Sopen02g017860' => 'spe', 'Sopen03g009170' => 'spe', 'Sopen03g027800' => 'spe', 'Sopen03g035030' => 'spe', 'Sopen04g017650' => 'spe', 'Sopen07g010510' => 'spe', 'Sopen10g031930' => 'spe', 'Sopen11g008760' => 'spe', 'Sopen12g026130' => 'spe', 'Sp1g29510' => 'spa', 'Sp2g09750' => 'spa', 'Sp3g02630' => 'spa', 'Sp5g15960' => 'spa', 'Sp5g22340' => 'spa', 'Sp5g29800' => 'spa', 'Sp6g27210' => 'spa', 'SpUn0026_0030' => 'spa', 'TAR369G0584' => 'tar', 'TAR374G1682' => 'tar', 'TAR375G0083' => 'tar', 'TAR375G0749' => 'tar', 'TAR375G0821' => 'tar', 'TAR376G0984' => 'tar', 'TAR376G1016' => 'tar', 'TAR381G0247' => 'tar', 'TAR622G0137' => 'tar', 'TAR623G1082' => 'tar', 'TAR624G0241' => 'tar', 'TAR624G0868' => 'tar', 'TAR626G0787' => 'tar', 'TAR629G0601' => 'tar', 'TAR633G1167' => 'tar', 'TAR633G2684' => 'tar', 'TAR636G2584' => 'tar', 'THA.LOC104798555' => 'tha', 'THA.LOC104798846' => 'tha', 'THA.LOC104802924' => 'tha', 'THA.LOC104807568' => 'tha', 'THA.LOC104807970' => 'tha', 'THA.LOC104808330' => 'tha', 'THA.LOC104811596' => 'tha', 'THA.LOC104814357' => 'tha', 'THA.LOC104816228' => 'tha', 'THA.LOC104821368' => 'tha', 'THA.LOC104827211' => 'tha', 'THA.LOC104827250' => 'tha', 'Thecc.02G008500' => 'tca', 'Thecc.02G210300' => 'tca', 'Thecc.03G087400' => 'tca', 'Thecc.05G214300' => 'tca', 'Thecc.05G239500' => 'tca', 'Thecc.08G199200' => 'tca', 'Thhalv10000882m.g' => 'esa', 'Thhalv10002514m.g' => 'esa', 'Thhalv10007515m.g' => 'esa', 'Thhalv10013266m.g' => 'esa', 'Thhalv10016654m.g' => 'esa', 'Thhalv10018515m.g' => 'esa', 'Thhalv10018590m.g' => 'esa', 'Thhalv10020554m.g' => 'esa', 'Thhalv10020580m.g' => 'esa', 'TPR.G11452' => 'tpr', 'TPR.G17082' => 'tpr', 'TPR.G27321' => 'tpr', 'TPR.G28282' => 'tpr', 'TPR.G30579' => 'tpr', 'TPR.G33920' => 'tpr', 'TPR.G38274' => 'tpr', 'TPR.G7818' => 'tpr', 'TWI14G1442' => 'twi', 'TWI32G0841' => 'twi', 'TWI34G1816' => 'twi', 'TWI36G0993' => 'twi', 'TWI38G1806' => 'twi', 'TWI39G1017' => 'twi', 'TWI60G1218' => 'twi', 'TWI63G1389' => 'twi', 'TWI75G1549' => 'twi', 'TWI81G0198' => 'twi', 'unitig_0.g920' => 'ugi', 'unitig_21.g20660' => 'ugi', 'unitig_21.g20879' => 'ugi', 'unitig_52.g17507' => 'ugi', 'unitig_52.g17508' => 'ugi', 'unitig_60.g25782' => 'ugi', 'unitig_61.g26075' => 'ugi', 'unitig_62.g23548' => 'ugi', 'unitig_62.g23653' => 'ugi', 'unitig_748.g7216' => 'ugi', 'unitig_748.g7217' => 'ugi', 'unitig_899.g15222' => 'ugi', 'unitig_899.g15475' => 'ugi', 'vmacro01065' => 'vma', 'vmacro03529' => 'vma', 'vmacro05575' => 'vma', 'vmacro06513' => 'vma', 'vmacro07637' => 'vma', 'vmacro07638' => 'vma', 'vmacro12516' => 'vma', 'vmacro12517' => 'vma', 'vmacro17542' => 'vma', 'VMungo0251G1862' => 'vmu', 'VMungo0251G2928' => 'vmu', 'VMungo0251G3756' => 'vmu', 'VMungo0464G1661' => 'vmu', 'VMungo0464G1906' => 'vmu', 'VMungo0540G0231' => 'vmu', 'VMungo0720G2864' => 'vmu', 'VMungo1127G0704' => 'vmu', 'VMungo1215G2454' => 'vmu', 'VMungo1309G1252' => 'vmu', 'VMungo1383G3616' => 'vmu', 'Zm00001eb015460' => 'zma', 'Zm00001eb041280' => 'zma', 'Zm00001eb143200' => 'zma', 'Zm00001eb150150' => 'zma', 'Zm00001eb163690' => 'zma', 'Zm00001eb324570' => 'zma', 'Zm00001eb395470' => 'zma', 'Zm00001eb405560' => 'zma', 'Zm00001eb433370' => 'zma' ) $gf_id = 'HOM05D000623' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000623' ) $data_identifier = 'HOM05D000623' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 8, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 14, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 6, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 12, 'sun' => (int) 8, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 10, 'rch' => (int) 8, 'rsi' => (int) 11, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 12, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 17, 'tha' => (int) 12, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 13, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1